I'm trying to run ASEReadCounter, but it's not accepting a VCF file as input. I'm getting the following error:
##### ERROR MESSAGE: Invalid command line: No tribble type was provided on the command line and the type of the file '/gpfs/commons/home/phoffman/ALS/2019_06/ase/vcfs/CGND-HRA-00013_header.vcf.gz' could not be determined dynamically. Please add an explicit type tag :NAME listing the correct type from among the supported types: ##### ERROR Name FeatureType Documentation ##### ERROR BCF2 VariantContext (this is an external codec and is not documented within GATK) ##### ERROR VCF VariantContext (this is an external codec and is not documented within GATK) ##### ERROR VCF3 VariantContext (this is an external codec and is not documented within GATK) ##### ERROR ------------------------------------------------------------------------------------------
I've tried searching for a way to solve this, but nothing appears on either Google or the GATK Forum that actually fixes the error.